If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ), 'gf_id' => 'HOM05D000840', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000840' ), 'data_identifier' => 'HOM05D000840', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000840', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '710', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36890' => 'bna', 'A06p11780' => 'bna', 'A06p11800' => 'bna', 'A06p11810' => 'bna', 'A06p11840' => 'bna', 'A06p11850' => 'bna', 'A06p11860' => 'bna', 'A06p39790' => 'bna', 'A08p31500' => 'bna', 'A09p04130' => 'bna', 'A09p04140' => 'bna', 'A09p61190' => 'bna', 'A09p61210' => 'bna', 'Aa31LG2G3790' => 'aar', 'Aa31LG4G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2010' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4288' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4294' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4297' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4298' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4301' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4303' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2667' => 'aag', 'Actinidia01521' => 'ach', 'Actinidia01522' => 'ach', 'Actinidia01692' => 'ach', 'Actinidia02256' => 'ach', 'Actinidia37856' => 'ach', 'Ah.10g029750' => 'amhyb', 'Ah.10g029760' => 'amhyb', 'Ah.12g064530' => 'amhyb', 'AL1G27900' => 'aly', 'AL1G27910' => 'aly', 'AL1G27930' => 'aly', 'AL1G27940' => 'aly', 'AL5G19840' => 'aly', 'Aqoxy1G00092' => 'aox', 'Aqoxy1G00093' => 'aox', 'Aqoxy1G00094' => 'aox', 'Aqoxy1G00098' => 'aox', 'Aqoxy1G03152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40JDZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F3D8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5CV98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHN65J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILI79H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2YY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4L5B1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEC4AR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PHR55S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZRU8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5KEUT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3HE6F' => 'arhy', 'AT1G15770' => 'ath', 'AT1G15772' => 'ath', 'AT1G15780' => 'ath', 'AT1G15790' => 'ath', 'AT2G10440' => 'ath', 'ATR0199G002' => 'atr', 'ATR0199G011' => 'atr', 'ATR0387G001' => 'atr', 'ATR0387G002' => 'atr', 'ATR0686G061' => 'atr', 'ATR0686G185' => 'atr', 'ATR1145G026' => 'atr', 'ATR1199G001' => 'atr', 'Atru.chr13.1285' => 'acertr', 'Atru.chr2.2734' => 'acertr', 'Atru.chr4.1635' => 'acertr', 'Atru.chr4.1644_Atru.chr4.1657' => 'acertr', 'Atru.chr6.284_Atru.chr6.285' => 'acertr', 'Atru.chr6.301' => 'acertr', 'Atru.chr6.302' => 'acertr', 'Atru.chr8.1115' => 'acertr', 'AUR62021042' => 'cqu', 'AUR62031677' => 'cqu', 'AUR62031678' => 'cqu', 'AUR62032561' => 'cqu', 'AUR62032562' => 'cqu', 'BcaB03g14521' => 'bca', 'BcaB03g14522' => 'bca', 'BcaB04g19519' => 'bca', 'BcaB04g19520' => 'bca', 'BcaB07g30069' => 'bca', 'BcaC01g02594' => 'bca', 'BcaC03g17604' => 'bca', 'BcaC04g23831' => 'bca', 'BcaC04g23832' => 'bca', 'BcaC06g30854' => 'bca', 'BcaC06g33709' => 'bca', 'BcaC06g36438' => 'bca', 'BcaC07g38794' => 'bca', 'BcaC07g41481' => 'bca', 'BolC2t11653H' => 'bol', 'BolC3t18559H' => 'bol', 'BolC5t30133H' => 'bol', 'BolC5t30134H' => 'bol', 'BolC5t30135H' => 'bol', 'BolC7t44365H' => 'bol', 'BolC8t49035H' => 'bol', 'BolC8t49355H' => 'bol', 'BolC8t52024H' => 'bol', 'BolC9t53366H' => 'bol', 'BraA02t08681Z' => 'bra', 'BraA06t24355Z' => 'bra', 'BraA06t24356Z' => 'bra', 'BraA06t26894Z' => 'bra', 'BraA08t35072Z' => 'bra', 'BraA09t36049Z' => 'bra', 'BraA09t36050Z' => 'bra', 'BraA09t41493Z' => 'bra', 'BraA09t41494Z' => 'bra', 'C02p55940' => 'bna', 'C05p13980' => 'bna', 'C05p14010' => 'bna', 'C05p14020' => 'bna', 'C05p14040' => 'bna', 'C07p38400' => 'bna', 'C08p17290' => 'bna', 'C08p44780' => 'bna', 'C09p04340' => 'bna', 'C09p04350' => 'bna', 'CAN.G1690.8' => 'can', 'CAN.G186.22' => 'can', 'CAN.G186.26' => 'can', 'CAN.G186.6' => 'can', 'CAN.G186.7' => 'can', 'CAN.G279.28' => 'can', 'CANSAT56G1456' => 'cansat', 'CANSAT56G1601' => 'cansat', 'CANSAT56G3623' => 'cansat', 'CARHR016270' => 'chi', 'CARHR016280' => 'chi', 'CARHR016290' => 'chi', 'CARHR016300' => 'chi', 'CARHR153230' => 'chi', 'Carub.0001s1556' => 'cru', 'Carub.0001s1557' => 'cru', 'Carub.0001s1558' => 'cru', 'Carub.0005s0839' => 'cru', 'Ca_01039_v3' => 'car', 'Ca_01040_v3' => 'car', 'Ca_20456_v3' => 'car', 'Ca_24041_v3' => 'car', 'CBR_g37208' => 'cbr', 'Cc00_g09670' => 'ccan', 'Cc00_g11640' => 'ccan', 'Cc02_g33070' => 'ccan', 'CDE02G1091' => 'cde', 'CDE02G2327' => 'cde', 'CDE04G1049' => 'cde', 'CDE04G1840' => 'cde', 'Cfa001922' => 'cfa', 'Cfa001923' => 'cfa', 'Cfa001925' => 'cfa', 'Cfa001926' => 'cfa', 'Cfa001928' => 'cfa', 'Ciclev10011310m.g' => 'ccl', 'Ciclev10013763m.g' => 'ccl', 'Ciclev10024717m.g' => 'ccl', 'Ciclev10026665m.g' => 'ccl', 'Ciclev10026804m.g' => 'ccl', 'Ciclev10026847m.g' => 'ccl', 'CiPaw.01G251200' => 'cil', 'CiPaw.02G159300' => 'cil', 'CiPaw.02G159400' => 'cil', 'CiPaw.02G159700' => 'cil', 'CiPaw.02G159800' => 'cil', 'CiPaw.02G160100' => 'cil', 'CiPaw.13G017300' => 'cil', 'CiPaw.13G017400' => 'cil', 'ClCG09G013450' => 'cla', 'ClCG09G013490' => 'cla', 'ClCG09G013500' => 'cla', 'ClCG09G013510' => 'cla', 'ClCG10G016310' => 'cla', 'ClCG11G012980' => 'cla', 'COL.COLO4_11842' => 'col', 'COL.COLO4_11843' => 'col', 'COL.COLO4_11846' => 'col', 'COL.COLO4_11847' => 'col', 'COL.COLO4_28954' => 'col', 'COL.COLO4_36143' => 'col', 'Cpa.g.sc10.131' => 'cpa', 'Cpa.g.sc14.206' => 'cpa', 'Cpa.g.sc14.207' => 'cpa', 'CsaV3_3G040050' => 'csa', 'CsaV3_7G006140' => 'csa', 'CsaV3_7G006150' => 'csa', 'CSS0002332' => 'camsi', 'CSS0003676' => 'camsi', 'CSS0022831' => 'camsi', 'CSS0046728' => 'camsi', 'DCAR_002016' => 'dca', 'DCAR_003830' => 'dca', 'DCAR_007818' => 'dca', 'DCAR_020603' => 'dca', 'DCAR_022468' => 'dca', 'Dinv05025' => 'din', 'Dinv20752' => 'din', 'Dinv20758' => 'din', 'Dinv31533' => 'din', 'Dinv31990' => 'din', 'Dinv31992' => 'din', 'Duzib018G0003' => 'dzi', 'Duzib160G0548' => 'dzi', 'Duzib235G0104' => 'dzi', 'Duzib235G0269' => 'dzi', 'Duzib235G0353' => 'dzi', 'Duzib235G1450' => 'dzi', 'ECA233G4790' => 'eca', 'ECA240G0511' => 'eca', 'ECA240G2103' => 'eca', 'EL10Ac2g02702' => 'bvu', 'Eucgr.A00861' => 'egr', 'Eucgr.E03431' => 'egr', 'Eucgr.E03433' => 'egr', 'Eucgr.E03533' => 'egr', 'Eucgr.G03197' => 'egr', 'Eucgr.J00087' => 'egr', 'Eucgr.J00089' => 'egr', 'Eucgr.J00090' => 'egr', 'FAN01G0468' => 'fan', 'FAN03G2632' => 'fan', 'FAN05G2675' => 'fan', 'FAN06G1526' => 'fan', 'FAN07G0838' => 'fan', 'FAN07G1031' => 'fan', 'FAN07G1872' => 'fan', 'FAN07G2847' => 'fan', 'FAN10G1691' => 'fan', 'FAN11G0386' => 'fan', 'FAN11G1002' => 'fan', 'FAN11G2226' => 'fan', 'FAN11G2882' => 'fan', 'FAN11G3785' => 'fan', 'FAN12G1735' => 'fan', 'FAN12G2429' => 'fan', 'FAN16G0121' => 'fan', 'FAN16G1760' => 'fan', 'FAN16G1995' => 'fan', 'FAN16G3358' => 'fan', 'FAN16G3492' => 'fan', 'FAN16G3694' => 'fan', 'FAN21G1506' => 'fan', 'FAN21G2894' => 'fan', 'FAN25G1337' => 'fan', 'FAN25G1451' => 'fan', 'FAN28G2929' => 'fan', 'FAN28G2945' => 'fan', 'FvH4_3g12350' => 'fve', 'FvH4_3g37483' => 'fve', 'FvH4_3g37484' => 'fve', 'FvH4_3g37510' => 'fve', 'FvH4_3g42320' => 'fve', 'FvH4_3g42330' => 'fve', 'FvH4_3g42361' => 'fve', 'FvH4_3g42370' => 'fve', 'FvH4_4g12010' => 'fve', 'FvH4_7g04352' => 'fve', 'Glyma.04G085100' => 'gma', 'Glyma.06G086700' => 'gma', 'Glyma.06G311550' => 'gma', 'Glyma.07G027751' => 'gma', 'Glyma.07G027800' => 'gma', 'Glyma.08G214900' => 'gma', 'Glyma.08G248400' => 'gma', 'Glyma.13G189300' => 'gma', 'Glyma.13G367700' => 'gma', 'Glyma.15G005500' => 'gma', 'Glyma.16G125400' => 'gma', 'Gohir.A05G121550' => 'ghi', 'Gohir.A05G121600' => 'ghi', 'Gohir.A05G121650' => 'ghi', 'Gohir.A05G121700' => 'ghi', 'Gohir.A10G072300' => 'ghi', 'Gohir.A10G072400' => 'ghi', 'Gohir.D05G122600' => 'ghi', 'Gohir.D05G122700' => 'ghi', 'Gohir.D10G078700' => 'ghi', 'Gohir.D10G078800' => 'ghi', 'Gorai.009G126100' => 'gra', 'Gorai.009G126200' => 'gra', 'Gorai.011G085500' => 'gra', 'Gorai.011G085600' => 'gra', 'GSVIVG01000679001' => 'vvi', 'GSVIVG01001754001' => 'vvi', 'GSVIVG01001758001' => 'vvi', 'GSVIVG01001880001' => 'vvi', 'GSVIVG01003532001' => 'vvi', 'GSVIVG01003577001' => 'vvi', 'GSVIVG01003580001' => 'vvi', 'GSVIVG01003583001' => 'vvi', 'GSVIVG01003889001' => 'vvi', 'GSVIVG01004878001' => 'vvi', 'GSVIVG01004884001' => 'vvi', 'GSVIVG01004895001' => 'vvi', 'GSVIVG01005290001' => 'vvi', 'GSVIVG01012457001' => 'vvi', 'GSVIVG01012462001' => 'vvi', 'GSVIVG01012463001' => 'vvi', 'GSVIVG01012464001' => 'vvi', 'GSVIVG01012465001' => 'vvi', 'GSVIVG01012467001' => 'vvi', 'GSVIVG01012469001' => 'vvi', 'GSVIVG01012959001' => 'vvi', 'GSVIVG01012964001' => 'vvi', 'GSVIVG01022350001' => 'vvi', 'GSVIVG01022351001' => 'vvi', 'GSVIVG01025804001' => 'vvi', 'GSVIVG01025805001' => 'vvi', 'GSVIVG01026685001' => 'vvi', 'GSVIVG01027201001' => 'vvi', 'GSVIVG01027202001' => 'vvi', 'GSVIVG01034311001' => 'vvi', 'GSVIVG01034315001' => 'vvi', 'GSVIVG01034318001' => 'vvi', 'HanXRQChr03g0079721' => 'han', 'HanXRQChr03g0080491' => 'han', 'HanXRQChr03g0080501' => 'han', 'HanXRQChr03g0080511' => 'han', 'HanXRQChr03g0080521' => 'han', 'HanXRQChr03g0080531' => 'han', 'HanXRQChr03g0080541' => 'han', 'HanXRQChr03g0080551' => 'han', 'HanXRQChr04g0125631' => 'han', 'HanXRQChr05g0129761' => 'han', 'HanXRQChr05g0144981' => 'han', 'HanXRQChr06g0177661' => 'han', 'HanXRQChr08g0225631' => 'han', 'HanXRQChr08g0235561' => 'han', 'HanXRQChr13g0393061' => 'han', 'HanXRQChr13g0410001' => 'han', 'Haze_02967' => 'cav', 'Haze_16613' => 'cav', 'Haze_16616' => 'cav', 'Haze_16618' => 'cav', 'Haze_16619' => 'cav', 'Hma1.2p1_0233F.1_g098230' => 'hma', 'Hma1.2p1_0233F.1_g098235' => 'hma', 'Hma1.2p1_0233F.1_g098240' => 'hma', 'HPP92_010547' => 'vpl', 'HPP92_010845' => 'vpl', 'HPP92_017080' => 'vpl', 'HPP92_017081' => 'vpl', 'Hund13419' => 'sun', 'Hund15769' => 'sun', 'Lalb_Chr01g0007491' => 'lal', 'Lalb_Chr01g0007501' => 'lal', 'Lalb_Chr01g0012231' => 'lal', 'Lalb_Chr04g0259531' => 'lal', 'Lalb_Chr04g0259541' => 'lal', 'Lalb_Chr04g0262271' => 'lal', 'Lalb_Chr19g0132841' => 'lal', 'Lalb_Chr19g0132851' => 'lal', 'Lalb_Chr24g0395381' => 'lal', 'Lalb_Chr25g0279141' => 'lal', 'Lj3g0017183' => 'lja', 'Lj3g0024586' => 'lja', 'Lj3g0027916' => 'lja', 'Lj7C492G1' => 'lonja', 'Lj7C492T11' => 'lonja', 'Lj7C492T6' => 'lonja', 'LjContig00430g0022715' => 'lja', 'Lju1220C1T6' => 'lonja', 'Lju1220E1G0' => 'lonja', 'Lju225E3T0' => 'lonja', 'Lsat_1_v5_gn_0_32220' => 'lsa', 'Lsat_1_v5_gn_5_51620' => 'lsa', 'Lsat_1_v5_gn_5_51640' => 'lsa', 'Lsat_1_v5_gn_5_51660' => 'lsa', 'Lsat_1_v5_gn_5_51680' => 'lsa', 'Lsat_1_v5_gn_5_51720' => 'lsa', 'Lsat_1_v5_gn_5_51740' => 'lsa', 'Lsat_1_v5_gn_5_51780' => 'lsa', 'Lsat_1_v5_gn_5_52140' => 'lsa', 'Lsat_1_v5_gn_6_111961' => 'lsa', 'Lsat_1_v5_gn_6_15960' => 'lsa', 'Lsat_1_v5_gn_8_83981' => 'lsa', 'Manes.04G107400' => 'mes', 'Manes.11G061900' => 'mes', 'Manes.11G062000' => 'mes', 'Mapoly0012s0015' => 'mpo', 'Mapoly0013s0037' => 'mpo', 'Mapoly0064s0010' => 'mpo', 'Mapoly0064s0014' => 'mpo', 'Mapoly0113s0050' => 'mpo', 'Mapoly0197s0008' => 'mpo', 'MBI04_g25415_MAGBIO' => 'mbi', 'MBI04_g27246_MAGBIO' => 'mbi', 'MBI04_g47465_MAGBIO' => 'mbi', 'MBI07_g38299_MAGBIO' => 'mbi', 'MBI12_g07473_MAGBIO' => 'mbi', 'MD02G1272400' => 'mdo', 'MD02G1272500' => 'mdo', 'MD02G1272700' => 'mdo', 'MD02G1272800' => 'mdo', 'MD03G1031600' => 'mdo', 'MD03G1031700' => 'mdo', 'MD03G1032600' => 'mdo', 'MD03G1032700' => 'mdo', 'MD03G1032800' => 'mdo', 'MD03G1032900' => 'mdo', 'MD03G1033000' => 'mdo', 'MD03G1033200' => 'mdo', 'MD03G1033300' => 'mdo', 'MD03G1033400' => 'mdo', 'MD03G1033500' => 'mdo', 'MD03G1033600' => 'mdo', 'MD03G1033700' => 'mdo', 'MD03G1033800' => 'mdo', 'MD03G1034600' => 'mdo', 'MD07G1041400' => 'mdo', 'MD07G1261500' => 'mdo', 'MD11G1035800' => 'mdo', 'MD11G1036600' => 'mdo', 'Medtr2g104400' => 'mtr', 'Medtr2g104430' => 'mtr', 'Medtr2g104450' => 'mtr', 'Medtr2g104460' => 'mtr', 'Medtr4g009635' => 'mtr', 'Medtr4g009710' => 'mtr', 'Medtr4g009740' => 'mtr', 'Medtr4g094745' => 'mtr', 'Medtr7g059275' => 'mtr', 'Medtr8g042930' => 'mtr', 'Medtr8g042950' => 'mtr', 'Medtr8g042960' => 'mtr', 'Medtr8g043680' => 'mtr', 'Medtr8g043880' => 'mtr', 'Medtr8g461290' => 'mtr', 'MELO3C009745.2' => 'cme', 'MELO3C018677.2' => 'cme', 'MELO3C018679.2' => 'cme', 'Migut.B01095' => 'egut', 'Migut.B01113' => 'egut', 'Migut.B01131' => 'egut', 'Migut.F01412' => 'egut', 'Migut.J01616' => 'egut', 'MSTRG.20450' => 'ama', 'MSTRG.20451' => 'ama', 'Nitab4.5_0004104g0090' => 'nta', 'Nitab4.5_0004105g0020' => 'nta', 'Nitab4.5_0004105g0070' => 'nta', 'Nitab4.5_0010235g0010' => 'nta', 'Nitab4.5_0010718g0010' => 'nta', 'Nn2g14599' => 'nnu', 'Nn7g36965' => 'nnu', 'Nn7g36966' => 'nnu', 'Nn7g37000' => 'nnu', 'Oeu012483.1' => 'oeu', 'Oeu012484.1' => 'oeu', 'Oeu013038.1' => 'oeu', 'Oeu013039.1' => 'oeu', 'Oeu020367.1' => 'oeu', 'Oeu027052.1' => 'oeu', 'Oeu027053.1' => 'oeu', 'Oeu027054.1' => 'oeu', 'Oeu034120.1' => 'oeu', 'Oeu060773.1' => 'oeu', 'Oeu060774.1' => 'oeu', 'Oeu064754.1' => 'oeu', 'Os04g0127800' => 'osa', 'Os08g0523600' => 'osa', 'Os08g0564800' => 'osa', 'Os12g0245000' => 'osa', 'Os12g0245100' => 'osa', 'Peaxi162Scf00195g00830' => 'pax', 'Peaxi162Scf00583g00535' => 'pax', 'Peaxi162Scf00583g00536' => 'pax', 'Peaxi162Scf00842g00021' => 'pax', 'Peaxi162Scf00842g00111' => 'pax', 'PGR044G0642' => 'pgr', 'PGR044G0790' => 'pgr', 'PGR044G1110' => 'pgr', 'PGR044G1453' => 'pgr', 'PGR044G1495' => 'pgr', 'PGR044G1887' => 'pgr', 'PGR044G2158' => 'pgr', 'PGR044G2437' => 'pgr', 'PGSC0003DMG400007442' => 'stu', 'PGSC0003DMG400008764' => 'stu', 'PGSC0003DMG400010627' => 'stu', 'PGSC0003DMG400010629' => 'stu', 'PGSC0003DMG400032554' => 'stu', 'PGSC0003DMG400034539' => 'stu', 'PGSC0003DMG400039743' => 'stu', 'PGSC0003DMG400040517' => 'stu', 'PGSC0003DMG400045790' => 'stu', 'PGSC0003DMG403018444' => 'stu', 'Phvul.005G180200' => 'pvu', 'Phvul.005G180300' => 'pvu', 'Phvul.010G157900' => 'pvu', 'Phvul.011G196400' => 'pvu', 'Potri.001G033400' => 'ptr', 'Potri.001G076920' => 'ptr', 'Potri.001G204900' => 'ptr', 'Potri.003G012400' => 'ptr', 'Potri.003G013000' => 'ptr', 'Potri.003G013300' => 'ptr', 'Potri.003G013900' => 'ptr', 'Potri.003G014000' => 'ptr', 'Potri.003G014156' => 'ptr', 'Potri.003G025200' => 'ptr', 'Potri.003G025500' => 'ptr', 'Potri.003G026510' => 'ptr', 'Potri.003G028089' => 'ptr', 'Potri.003G028245' => 'ptr', 'Potri.003G028401' => 'ptr', 'Potri.003G152950' => 'ptr', 'Potri.006G031200' => 'ptr', 'Potri.016G028200' => 'ptr', 'Pp3c14_8410' => 'ppa', 'Pp3c26_14670' => 'ppa', 'Pp3c4_28000' => 'ppa', 'Pp3c7_25010' => 'ppa', 'Prupe.2G048200' => 'ppe', 'Prupe.6G027400' => 'ppe', 'Prupe.6G027500' => 'ppe', 'Prupe.6G027600' => 'ppe', 'Prupe.6G027700' => 'ppe', 'Prupe.6G027800' => 'ppe', 'Prupe.6G027900' => 'ppe', 'Prupe.6G111000' => 'ppe', 'Prupe.6G198300' => 'ppe', 'Prupe.I003700' => 'ppe', 'Psat0s2862g0080' => 'psa', 'Psat3g045520' => 'psa', 'Psat4g143360' => 'psa', 'Psat4g189720' => 'psa', 'Psat5g214880' => 'psa', 'Psat5g216480' => 'psa', 'Psat5g304160' => 'psa', 'Psat5g304200' => 'psa', 'Psat6g121640' => 'psa', 'Psat6g121680' => 'psa', 'Psat7g148840' => 'psa', 'Psat7g257920' => 'psa', 'Psat7g257960' => 'psa', 'Psat7g258000' => 'psa', 'Psat7g258040' => 'psa', 'PSO210G0831' => 'pso', 'PSO210G1555' => 'pso', 'PSO210G1830' => 'pso', 'PSO210G1906' => 'pso', 'PSO210G3299' => 'pso', 'PSO210G4621' => 'pso', 'PSO210G5383' => 'pso', 'PSO210G6661' => 'pso', 'PSO210G6664' => 'pso', 'PSO210G6990' => 'pso', 'PSO210G7081' => 'pso', 'PSO210G7462' => 'pso', 'PSO210G7701' => 'pso', 'PSO210G7771' => 'pso', 'PSO339G1184' => 'pso', 'PSO339G2201' => 'pso', 'PSO339G3445' => 'pso', 'PSO339G5869' => 'pso', 'PSO384G1694' => 'pso', 'PSO384G2259' => 'pso', 'PSO384G2922' => 'pso', 'PSO541G1453' => 'pso', 'PSO541G2801' => 'pso', 'PSO541G5482' => 'pso', 'PSO648G0021' => 'pso', 'PSO675G2909' => 'pso', 'PSO832G2393' => 'pso', 'QL01p036709' => 'qlo', 'QL04p021887' => 'qlo', 'QL04p090235' => 'qlo', 'QL04p090594' => 'qlo', 'QL05p031619' => 'qlo', 'QL05p031633' => 'qlo', 'QL05p031838' => 'qlo', 'QL05p031849' => 'qlo', 'QL05p032540' => 'qlo', 'QL05p032549' => 'qlo', 'QL05p032987' => 'qlo', 'QL05p033046' => 'qlo', 'QL05p033135' => 'qlo', 'QL05p033176' => 'qlo', 'QL05p033578' => 'qlo', 'QL07p013568' => 'qlo', 'QL07p013577' => 'qlo', 'RcHm_v2.0_Chr4g0390581' => 'rch', 'RcHm_v2.0_Chr4g0409611' => 'rch', 'RcHm_v2.0_Chr4g0419101' => 'rch', 'RcHm_v2.0_Chr5g0075711' => 'rch', 'RcHm_v2.0_Chr5g0075731' => 'rch', 'RcHm_v2.0_Chr5g0075781' => 'rch', 'RcHm_v2.0_Chr5g0075801' => 'rch', 'RcHm_v2.0_Chr5g0075811' => 'rch', 'RcHm_v2.0_Chr5g0075821' => 'rch', 'RcHm_v2.0_Chr5g0075831' => 'rch', 'RcHm_v2.0_Chr5g0075841' => 'rch', 'RcHm_v2.0_Chr5g0075851' => 'rch', 'RcHm_v2.0_Chr5g0075861' => 'rch', 'RcHm_v2.0_Chr5g0075871' => 'rch', 'Rhsim01G0071500' => 'rsi', 'Rhsim01G0072100' => 'rsi', 'Rhsim01G0122800' => 'rsi', 'Rhsim01G0122900' => 'rsi', 'Rhsim01G0123000' => 'rsi', 'Rhsim01G0143500' => 'rsi', 'Rhsim07G0071900' => 'rsi', 'Rhsim13G0231500' => 'rsi', 'Sabra01G0023700' => 'sbr', 'Sabra01G0054400' => 'sbr', 'Sabra03G0015900' => 'sbr', 'Sabra03G0016000' => 'sbr', 'Sabra03G0016100' => 'sbr', 'Sabra11G0064900' => 'sbr', 'SalBow6G4582' => 'sbo', 'SalBow8G1535' => 'sbo', 'SalBow8G4283' => 'sbo', 'Sc08g0008030' => 'sci', 'Sc14g0004830' => 'sci', 'Sc14g0005730' => 'sci', 'Sed0002314' => 'sed', 'Sed0003629' => 'sed', 'Sed0004214' => 'sed', 'Sed0008820' => 'sed', 'Sed0011014' => 'sed', 'Sed0024347' => 'sed', 'SEGI_18185' => 'sgi', 'SEGI_21695' => 'sgi', 'SEGI_24370' => 'sgi', 'SEGI_26200' => 'sgi', 'SEGI_31544' => 'sgi', 'SEGI_31802' => 'sgi', 'SEGI_41180' => 'sgi', 'SGA_v2.0_scaffold172G38982' => 'sas', 'SGA_v2.0_scaffold66G22302' => 'sas', 'SHI11281' => 'shi', 'SMO196G0196' => 'smo', 'SMO196G0232' => 'smo', 'SMO234G0017' => 'smo', 'SMO358G0234' => 'smo', 'Solyc01g057445.1' => 'sly', 'Solyc04g009457.1' => 'sly', 'Solyc04g009490.1' => 'sly', 'Solyc04g009500.4' => 'sly', 'Solyc04g017873.1' => 'sly', 'Solyc04g017925.1' => 'sly', 'Solyc04g017945.1' => 'sly', 'Solyc04g018005.1' => 'sly', 'Solyc04g018040.1' => 'sly', 'Sopen04g004610' => 'spe', 'Sopen04g004630' => 'spe', 'Sopen04g004640' => 'spe', 'Sopen04g004650' => 'spe', 'Sopen04g004660' => 'spe', 'Sp1g14070' => 'spa', 'Sp1g14080' => 'spa', 'Sp1g14090' => 'spa', 'Sp2g18090' => 'spa', 'TAR633G0986' => 'tar', 'TAR633G1298' => 'tar', 'TAR633G2034' => 'tar', 'TAR633G2216' => 'tar', 'THA.LOC104805520' => 'tha', 'THA.LOC104808194' => 'tha', 'THA.LOC104822786' => 'tha', 'Thecc.06G034100' => 'tca', 'Thecc.06G034200' => 'tca', 'Thecc.06G034300' => 'tca', 'Thecc.06G034400' => 'tca', 'Thhalv10003633m.g' => 'esa', 'Thhalv10006572m.g' => 'esa', 'Thhalv10008460m.g' => 'esa', 'TPR.G19143' => 'tpr', 'TPR.G20703' => 'tpr', 'TPR.G20705' => 'tpr', 'TPR.G2389' => 'tpr', 'TPR.G247' => 'tpr', 'TPR.G37212' => 'tpr', 'TPR.G38604' => 'tpr', 'TPR.G38665' => 'tpr', 'TPR.G38700' => 'tpr', 'TWI12G0605' => 'twi', 'TWI53G0683' => 'twi', 'TWI74G1281' => 'twi', 'TWI75G0929' => 'twi', 'TWI75G1741' => 'twi', 'unitig_46.g18254' => 'ugi', 'unitig_46.g18255' => 'ugi', 'unitig_46.g18378' => 'ugi', 'unitig_46.g18379' => 'ugi', 'unitig_48.g30293' => 'ugi', 'unitig_48.g30294' => 'ugi', 'vmacro04228' => 'vma', 'vmacro12684' => 'vma', 'vmacro13781' => 'vma', 'vmacro13784' => 'vma', 'vmacro21082' => 'vma', 'vmacro21083' => 'vma', 'vmacro21084' => 'vma', 'VMungo0251G0544' => 'vmu', 'VMungo0331G0091' => 'vmu', 'VMungo0647G1616' => 'vmu', 'VMungo1080G0284' => 'vmu', 'VMungo1080G0802' => 'vmu', 'VMungo1080G1304' => 'vmu', 'VMungo1080G1356' => 'vmu', 'Zm00001eb038670' => 'zma', 'Zm00001eb175670' => 'zma' ) $gf_id = 'HOM05D000840' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000840' ) $data_identifier = 'HOM05D000840' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 2, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 5, 'bca' => (int) 14, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 28, 'fve' => (int) 10, 'gma' => (int) 11, 'ghi' => (int) 10, 'gra' => (int) 4, 'vvi' => (int) 32, 'han' => (int) 16, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 3, 'mpo' => (int) 6, 'mbi' => (int) 5, 'mdo' => (int) 23, 'mtr' => (int) 15, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 5, 'nnu' => (int) 4, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 4, 'ptr' => (int) 18, 'ppa' => (int) 4, 'ppe' => (int) 10, 'psa' => (int) 15, 'pso' => (int) 27, 'qlo' => (int) 17, 'rch' => (int) 14, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 7, 'sas' => (int) 2, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 3, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb175670' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1